課程資訊
課程名稱
基因體學
Genomics 
開課學期
110-2 
授課對象
醫學院  基因體暨蛋白體醫學研究所  
授課教師
丁照棣 
課號
LS5080 
課程識別碼
B21EU2240 
班次
 
學分
3.0 
全/半年
半年 
必/選修
選修 
上課時間
星期四8,9,10(15:30~18:20) 
上課地點
生科419 
備註
本課程以英語授課。與林友瑜合授
總人數上限:30人 
 
課程簡介影片
 
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課程大綱
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課程概述

Recent advances in genomics have significantly revolutionized the ways which we do science in the 21st century. With the completion of the human draft genome, the new genome technologies have transformed our ability to understand the structure and function of genomes and allow scientists to explore the genomes of multicellular organisms. This course is designed to introduce undergraduate students, who are interested in this exciting and rapidly evolving field, the basic knowledge of genome and the state-of-the-art genome technologies. The lectures will cover an introduction on genome projects, sequencing technologies, genetic variation, transcriptomics, proteomics, functional genomics, comparative genomics, metagenomics and epigenomics. This semester, we are part of the Genome Education Partnership (GEP) and students taking this course will work on an annotation project under the guidance of the instructors. The goal is to provide opportunities for undergraduate students to participate in genomic research. Students will learn to annotate genes and other features, leading to analysis of a question in genomics and research publication. More information about GEP can be found at http://gep.wustl.edu and the 2014 project is described at http://gep.wustl.edu/projects/dot_chromosome. 

課程目標
The aim for this course is to provide students an up-to-date knowledge in genome science at the introductory level and act as a bridging course to the more advanced levels. In addition to basic genome science, participating undergraduates will learn to annotate genes and other features, leading to address scientific questions in genomics and research publication. 
課程要求
All students should have taken introductory level of genetics. The instructors will assume that all participants are familiar with basic terminologies in genetics (http://gep.wustl.edu/repository/introduction_to_genomics/GEP_Glossary.pdf). Students should read the assigned materials and/or watch the online lectures every week prior to lecture. Attendance at all course sessions is expected and is essential for finishing homework and assigned project. In-class discussion, homework, annotation project and student presentation will be the main activities in the classroom. Keeping electronic notes as a Google documents sharing with instructors is required. Your notes will help us to guide you throughout the project. An example of electronic notes will be provided in class. At the end of the semester, students will present their projects and write a scientific report on their project. Example of student’s report can be viewed online at http://gep.wustl.edu/curriculum/student_work. 
預期每週課後學習時數
 
Office Hours
每週四 18:20~19:20 備註: by appointment 
指定閱讀
 
參考書目
Major References:
Introduction to Genomics by Arthur M. Lesk (2nd Edition, Oxford University Press, 2011)
A Primer of Genome Science by G. Gibson and S. V. Muse (3rd Edition, Sinauer, 2009)

Other References:
Dictionary of DNA and genome technology by P. Singleton (Wiley-Blackwell, 2010)
Evolutionary Genomics and Proteomics Edited by M. Pagel and A. Pomiankowski (Sinauer Associates, 2007)
From Genes to Genomes: Concepts and Applications of DNA Technology by J. W. Dale and M. van Schantz (John Wiley & Sons, 2007) [2002 Ed. available through NTU library]
Foundations of comparative genomics by Arcady R. Mushegian (Academic Press, 2007)
Genome Science: A Practical and Conceptual Introduction to Molecular Genetic Analysis in Eukaryotes by David Micklos (CSHL Press, 2012)
Genomes 3 by T. A. Brown (Garland Science, 2007) [2nd Ed. available at NCBI, http://www.ncbi.nlm.nih.gov/books/NBK21128/] 
評量方式
(僅供參考)
   
課程進度
週次
日期
單元主題
Week 1
2/17  Introduction (Ting) 
Week 2
2/24  DNA Sequencing Technologies (Lin) 
Week 3
3/03  The Human Genome Project (Lin) 
Week 4
3/10  Mapping, Sequencing, Annotation (Lin) 
Week 5
3/17  Databases (Lin) 
Week 6
3/24  Transcriptomics (Ting) 
Week 7
3/31  Genome Variation (Ting) 
Week 8
4/07  The Impact of Genomics on Human Health and Disease (Ting) 
Week 9
4/14  Precision Medicine (Guest Lecture by Dr. Meng-Shin Shiao) 
Week 10
4/21  Personal Genetics (Ting)
 
Week 11
4/28  Genetic Testing and Gene Therapy (Ting) 
Week 12
5/05  Genome Evolution (Ting) 
Week 13
5/12  Functional Genomics (Ting) 
Week 14
5/19  Genomics and Anthropology (Ting) 
Week 15
5/26  Metagenomics (Ting) 
Week 16
6/02  Final Presentation